Ok, first off, is your resources.cfg file located in your config folder or not? The path specifies not, but the template has it in /config. Make sure that's correct. (Speaking of that file, did you remember to edit it?)
Otherwise, there are some entries you do not add your own mod's folder to, because you either don't have those files, or you just use the default ones because there's no need for them.
DefaultMainSettings (and the SLD2 one I posted) should be default, unless you of course copied those files to your own mod (but there's not much use in doing so).
Same thing with DefaultUserKeys + SLD2. Keep it default.
Also, yes, the base languages and stuff should also be left alone. It only specifies the name of the file, not the path. The path is done by BaseLanguageFolder, so basically you have the path doubled up. Just set the DefaultBaseLanguage and DefaultGameLanguage to only be the file name.
That should be it. Here's the edit:
If it crashes, check the log file at Documents\Amnesia\FinalRevelations\hpl.log