What I thought the Game was Going to be About *SPOILERS*

[kojack]

I thought the same thing. Right up until I was back to the game menu at the end, I kept thinking "if he suddenly wakes up and david says 'you are healed', I won't be surprised".

It seemed to really fit the initial story, the scan was made of Simon 1 to brute force test many different scenarios on his simulated brain to find a good course of treatment. Believing he had saved the remains of the human race could be a good way to overcome the guilt of Ashley's death.