Gamepads?? works with Amnesia ??

[Your Computer]

I have the same controller as you do and it works for me with the Logitech Profiler, even for the Penumbra series.

You probably have the Profiler set to load a persistent profile on start. What you want to have it do is load profiles automatically based on the game that gets loaded. Go to Options > Global Profiler Settings and under Type of profile to apply make sure Apply profiles to games automatically is selected.

Amnesia itself does not have controller support, so using the Logitech Profiler is the only (or best) way to get your Logitech controller to work in Amnesia.